Withheld Genome Records
The genome records listed here fullfill the general criteria for inclusion in rrnDB. Reasons for rejection from rrnDB are listed further below.
| data source record id | data source organism name | 16S copy number | reasons for rejection (details below table) |
|---|---|---|---|
| GCF_040215685.1 | Micromonospora sp. HUAS YX12 | 3 | inconsistent meta data |
| GCF_040254265.1 | Kribbella sp. HUAS MG21 | 2 | inconsistent meta data |
| GCF_040267715.1 | Klebsiella oxytoca | 8 | inconsistent meta data |
| GCF_040448705.1 | Lactiplantibacillus plantarum | 5 | inconsistent meta data |
| GCF_040499845.1 | Micromonospora sp. CCTCC AA 2012012 | 4 | inconsistent meta data |
| GCF_040516025.1 | Lactococcus lactis subsp. lactis | 6 | inconsistent meta data |
| GCF_040516035.1 | Latilactobacillus sakei subsp. sakei | 7 | inconsistent meta data |
| GCF_040516045.1 | Leuconostoc mesenteroides subsp. mesenteroides | 4 | inconsistent meta data |
| GCF_040536905.1 | Lacticaseibacillus paracasei | 5 | inconsistent meta data |
| GCF_040536915.1 | Pediococcus argentinicus | 4 | inconsistent meta data |
| GCF_040581415.1 | Paraconexibacter sp. AEG42_29 | 1 | inconsistent meta data |
| GCF_040782645.1 | Streptomyces sp. HUAS ZL42 | 6 | inconsistent meta data |
| GCF_040960825.1 | Mycobacterium intracellulare | 1 | inconsistent meta data |
| GCF_040970175.1 | Mycobacterium intracellulare | 1 | inconsistent meta data |
| GCF_040970225.1 | Bacillus aerius | 8 | inconsistent meta data |
| GCF_040970235.1 | Mycobacterium intracellulare | 1 | inconsistent meta data |
| GCF_041080625.1 | Streptomyces sp. CG1 | 6 | inconsistent meta data |
| GCF_041080655.1 | Streptomyces sp. CG4 | 7 | inconsistent meta data |
| GCF_041080665.1 | Streptomyces sp. cg2 | 7 | inconsistent meta data |
| GCF_041080675.1 | Streptomyces sp. cg36 | 7 | inconsistent meta data |
| GCF_041228775.1 | Pseudomonas xanthosomatis | 6 | inconsistent meta data |
| GCA_045689355.1 | Methanoculleus palmolei | 0 | 16S rRNA genes missing |
| GCF_046058925.1 | Photobacterium piscicola | 25 | 16S copy number too high |
| GCF_048085735.1 | Rhizobium rhizogenes | 0 | 16S rRNA genes missing |
| GCF_048320865.1 | Klebsiella pneumoniae | 0 | 16S rRNA genes missing |
Reasons why records are being held back
- inconsistent meta data:
- Assembly statistics file reports non-molecule top-level sequences. Inconsistency between assembly report and statistics files.
- 16S rRNA genes missing:
- No 16S gene were found via BLAST and no feature table is published on NCBI FTP site
- 16S copy number too high:
- Unrealistically high 16S copy number, indicating assembly error