Withheld Genome Records
The genome records listed here fullfill the general criteria for inclusion in rrnDB. Reasons for rejection from rrnDB are listed further below.
| data source record id | data source organism name | 16S copy number | reasons for rejection (details below table) |
|---|---|---|---|
| GCF_036894955.1 | Paenibacillus sp. KS-LC4 | 8 | inconsistent meta data |
| GCF_036895565.1 | Flavobacterium sp. KS-LB2 | 4 | inconsistent meta data |
| GCF_036896575.1 | Acinetobacter sp. KS-LM10 | 7 | inconsistent meta data |
| GCF_036967225.1 | Klebsiella pneumoniae | 8 | inconsistent meta data |
| GCF_037099845.1 | Lactiplantibacillus plantarum | 5 | inconsistent meta data |
| GCF_037099855.1 | Lacticaseibacillus paracasei | 5 | inconsistent meta data |
| GCF_037099865.1 | Lactiplantibacillus plantarum subsp. plantarum | 5 | inconsistent meta data |
| GCF_037100195.1 | Lactiplantibacillus plantarum | 5 | inconsistent meta data |
| GCF_037100215.1 | Bifidobacterium longum subsp. longum | 4 | inconsistent meta data |
| GCF_037100225.1 | Lactobacillus gasseri | 4 | inconsistent meta data |
| GCF_037113575.1 | Lactiplantibacillus plantarum | 5 | inconsistent meta data |
| GCF_037126165.1 | Bacillus velezensis | 9 | inconsistent meta data |
| GCF_037212895.1 | Erwinia amylovora | 7 | inconsistent meta data |
| GCF_037217235.1 | Enterobacter hormaechei | 8 | inconsistent meta data |
| GCF_037327425.1 | Rhodococcus sovatensis | 4 | inconsistent meta data |
| GCF_037414485.1 | Lactiplantibacillus plantarum | 5 | inconsistent meta data |
| GCF_037463925.1 | Rhodococcus qingshengii | 5 | inconsistent meta data |
| GCF_037477915.1 | Moorella thermoacetica | 2 | inconsistent meta data |
| GCF_037477925.1 | Moorella thermoacetica | 2 | inconsistent meta data |
| GCF_037477935.1 | Moorella humiferrea | 2 | inconsistent meta data |
| GCF_037477945.1 | Moorella humiferrea | 2 | inconsistent meta data |
| GCF_037477955.1 | Moorella thermoacetica | 2 | inconsistent meta data |
| GCF_037477965.1 | Moorella thermoacetica | 2 | inconsistent meta data |
| GCF_037482115.1 | Escherichia coli | 7 | inconsistent meta data |
| GCF_037853395.1 | Leclercia pneumoniae | 7 | inconsistent meta data |
Reasons why records are being held back
- inconsistent meta data:
- Assembly statistics file reports non-molecule top-level sequences. Inconsistency between assembly report and statistics files.
- 16S rRNA genes missing:
- No 16S gene were found via BLAST and no feature table is published on NCBI FTP site
- rrn operon deleted:
- rrn operons were deleted from strain, see Quan et al 26438293
- 16S copy number too high:
- Unrealistically high 16S copy number, indicating assembly error