Withheld Genome Records
The genome records listed here fullfill the general criteria for inclusion in rrnDB. Reasons for rejection from rrnDB are listed further below.
| data source record id | data source organism name | 16S copy number | reasons for rejection (details below table) |
|---|---|---|---|
| GCF_037100215.1 | Bifidobacterium longum subsp. longum | 4 | inconsistent meta data |
| GCF_037100225.1 | Lactobacillus gasseri | 4 | inconsistent meta data |
| GCF_037113575.1 | Lactiplantibacillus plantarum | 5 | inconsistent meta data |
| GCF_037126165.1 | Bacillus velezensis | 9 | inconsistent meta data |
| GCF_037212895.1 | Erwinia amylovora | 7 | inconsistent meta data |
| GCF_037217235.1 | Enterobacter hormaechei | 8 | inconsistent meta data |
| GCF_037414485.1 | Lactiplantibacillus plantarum | 5 | inconsistent meta data |
| GCF_037463925.1 | Rhodococcus qingshengii | 5 | inconsistent meta data |
| GCF_037477915.1 | Moorella thermoacetica | 2 | inconsistent meta data |
| GCF_037477925.1 | Moorella thermoacetica | 2 | inconsistent meta data |
| GCF_037477935.1 | Moorella humiferrea | 2 | inconsistent meta data |
| GCF_037477955.1 | Moorella thermoacetica | 2 | inconsistent meta data |
| GCF_037477965.1 | Moorella thermoacetica | 2 | inconsistent meta data |
| GCF_037482115.1 | Escherichia coli | 7 | inconsistent meta data |
| GCF_037853395.1 | Leclercia pneumoniae | 7 | inconsistent meta data |
| GCF_037890675.1 | Methylovirgula sp. 4M-Z18 | 2 | inconsistent meta data |
| GCF_037938425.1 | Escherichia coli | 7 | inconsistent meta data |
| GCF_037939535.1 | Escherichia coli | 7 | inconsistent meta data |
| GCF_038018215.1 | Citrobacter freundii | 8 | inconsistent meta data |
| GCF_038098635.1 | Lacticaseibacillus paracasei subsp. tolerans | 5 | inconsistent meta data |
| GCF_038237375.1 | Alcaligenes sp. SDU_A2 | 3 | inconsistent meta data |
| GCF_038239325.1 | Psychrobacter sp. KFRI-CH2-11 | 4 | inconsistent meta data |
| GCF_038397775.1 | Pseudomonas sp. RC10 | 5 | inconsistent meta data |
| GCF_039085625.1 | Leclercia adecarboxylata | 8 | inconsistent meta data |
| GCF_039233145.1 | Moorella humiferrea | 2 | inconsistent meta data |
Reasons why records are being held back
- inconsistent meta data:
- Assembly statistics file reports non-molecule top-level sequences. Inconsistency between assembly report and statistics files.
- 16S rRNA genes missing:
- No 16S gene were found via BLAST and no feature table is published on NCBI FTP site
- 16S copy number too high:
- Unrealistically high 16S copy number, indicating assembly error