Withheld Genome Records
The genome records listed here fullfill the general criteria for inclusion in rrnDB. Reasons for rejection from rrnDB are listed further below.
| data source record id | data source organism name | 16S copy number | reasons for rejection (details below table) |
|---|---|---|---|
| GCF_014337925.2 | Roseobacter litoralis | 1 | inconsistent meta data |
| GCF_017100085.1 | Clostridium botulinum | 11 | inconsistent meta data |
| GCF_017101655.1 | Clostridium botulinum | 11 | inconsistent meta data |
| GCF_023278485.2 | Mycobacterium intracellulare | 0 | 16S rRNA genes missing |
| GCF_024509915.1 | Parageobacillus thermoglucosidasius | 11 | inconsistent meta data |
| GCA_024758765.1 | Mycobacterium sp. SVM_VP21 | 0 | 16S rRNA genes missing |
| GCA_028751585.1 | Streptomyces lavenduligriseus | 0 | 16S rRNA genes missing |
| GCF_030517125.1 | Enterococcus faecalis | 4 | inconsistent meta data |
| GCF_030517355.1 | Enterococcus faecalis | 4 | inconsistent meta data |
| GCF_030517385.1 | Enterococcus faecalis | 4 | inconsistent meta data |
| GCF_030517415.1 | Enterococcus faecalis | 4 | inconsistent meta data |
| GCF_030517445.1 | Enterococcus faecalis | 4 | inconsistent meta data |
| GCF_030517475.1 | Enterococcus faecalis | 4 | inconsistent meta data |
| GCF_030517505.1 | Enterococcus faecalis | 4 | inconsistent meta data |
| GCF_030517535.1 | Enterococcus faecalis | 4 | inconsistent meta data |
| GCF_030517565.1 | Enterococcus faecalis | 4 | inconsistent meta data |
| GCF_030517625.1 | Enterococcus faecalis | 4 | inconsistent meta data |
| GCF_030520185.1 | Bacillus licheniformis | 0 | 16S rRNA genes missing |
| GCA_030704225.1 | Kosakonia sp. H02 | 0 | 16S rRNA genes missing |
| GCA_032463725.2 | Streptomyces sp. Li-HN-5-13 | 0 | 16S rRNA genes missing |
| GCF_036596345.1 | Sphingomonas sp. gentR | 4 | inconsistent meta data |
| GCF_036621415.1 | Nitratireductor thuwali | 2 | inconsistent meta data |
| GCF_036812735.1 | Terrisporobacter glycolicus ATCC 14880 = DSM 1288 | 12 | inconsistent meta data |
| GCF_036828685.1 | Delftia tsuruhatensis | 5 | inconsistent meta data |
| GCF_036864985.1 | Janibacter terrae | 2 | inconsistent meta data |
Reasons why records are being held back
- inconsistent meta data:
- Assembly statistics file reports non-molecule top-level sequences. Inconsistency between assembly report and statistics files.
- 16S rRNA genes missing:
- No 16S gene were found via BLAST and no feature table is published on NCBI FTP site
- rrn operon deleted:
- rrn operons were deleted from strain, see Quan et al 26438293
- 16S copy number too high:
- Unrealistically high 16S copy number, indicating assembly error