Withheld Genome Records
The genome records listed here fullfill the general criteria for inclusion in rrnDB. Reasons for rejection from rrnDB are listed further below.
| data source record id | data source organism name | 16S copy number | reasons for rejection (details below table) |
|---|---|---|---|
| rrnDBv3-1872 | Vibrio cholerae O139R | — | |
| GCF_000013845.2 | Clostridium perfringens SM101 | 10 | inconsistent meta data |
| GCF_000091085.2 | Chlamydia pneumoniae AR39 | 1 | inconsistent meta data |
| GCA_000186985.3 | Mycoplasma haemofelis Ohio2 | 1 | inconsistent meta data |
| GCF_000211255.2 | Enterococcus faecalis 62 | 4 | inconsistent meta data |
| GCF_000281215.1 | Pseudomonas putida DOT-T1E | 0 | 16S rRNA genes missing |
| GCF_000305335.2 | Streptococcus salivarius 57.I | 6 | inconsistent meta data |
| GCF_000307585.2 | Thermoanaerobacterium saccharolyticum JW/SL-YS485 | 5 | inconsistent meta data |
| GCF_000445445.2 | Sporomusa ovata DSM 2662 | 15 | inconsistent meta data |
| GCF_000968715.2 | Halomonas sp. HG01 | 0 | 16S rRNA genes missing |
| GCF_000988385.1 | Escherichia coli | 2 | rrn operon deleted |
| GCF_000988465.1 | Escherichia coli | 1 | rrn operon deleted |
| GCF_001941975.2 | Sporomusa sphaeroides DSM 2875 | 12 | inconsistent meta data |
| GCF_002162355.1 | Tumebacillus avium | 37 | 16S copy number too high |
| GCF_002243515.1 | Tumebacillus algifaecis | 27 | 16S copy number too high |
| GCF_002925525.1 | Escherichia coli | 7 | inconsistent meta data |
| GCF_003431975.1 | Bacillus pumilus | 8 | inconsistent meta data |
| GCF_003445395.2 | Bacillus thuringiensis serovar israelensis | 14 | inconsistent meta data |
| GCF_003445415.1 | Burkholderia pseudomallei | 4 | inconsistent meta data |
| GCF_003534205.1 | Listeria weihenstephanensis | 6 | inconsistent meta data |
| GCF_003613035.1 | Vibrio alginolyticus | 12 | inconsistent meta data |
| GCF_003613065.1 | Vibrio alginolyticus | 12 | inconsistent meta data |
| GCF_009661485.2 | Klebsiella pneumoniae | 8 | inconsistent meta data |
| GCF_009738595.2 | Klebsiella pneumoniae subsp. pneumoniae | 8 | inconsistent meta data |
| GCF_011220525.1 | Paenibacillus larvae subsp. larvae | 8 | inconsistent meta data |
Reasons why records are being held back
- inconsistent meta data:
- Assembly statistics file reports non-molecule top-level sequences. Inconsistency between assembly report and statistics files.
- 16S rRNA genes missing:
- No 16S gene were found via BLAST and no feature table is published on NCBI FTP site
- rrn operon deleted:
- rrn operons were deleted from strain, see Quan et al 26438293
- 16S copy number too high:
- Unrealistically high 16S copy number, indicating assembly error