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16S copy number statistics
# Genomes Range Mode Median Mean Std dev
48700 1 - 22 7 6.0 5.5 2.8
2025-04-08T16:40:59.619433 image/svg+xml Matplotlib v3.6.3, https://matplotlib.org/
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Data source record id Data source organism name NCBI scientific name (mouse over) RDP taxa 16S copies
GCA_000146265.4 Aggregatibacter actinomycetemcomitans D11S-1
Aggregatibacter (genus) 6
GCA_000186985.3 Mycoplasma haemofelis Ohio2
Haemobartonella (genus) 1
GCA_000474035.1 synthetic Escherichia coli C321.deltaA
Escherichia/Shigella (genus) 7
GCA_000826905.1 synthetic Escherichia coli C321.deltaA
Escherichia/Shigella (genus) 7
GCA_000826925.1 synthetic Escherichia coli C321.deltaA
Escherichia/Shigella (genus) 7
GCA_001077535.2 Clostridioides difficile ATCC 9689 = DSM 1296
Clostridioides (genus) 12
GCA_001747005.2 Cyanobacterium sp. IPPAS B-1200
Cyanobacterium (genus) 3
GCA_001956655.2 Staphylococcus epidermidis
Staphylococcus (genus) 6
GCA_004295685.1 Fluviispira sanaruensis
Fluviispira (genus) 5
GCA_009936135.1 Candidatus Chazhemtobacterium aquaticus
Bacteria (domain) 1
GCA_014302835.1 Pedobacter sp. PAMC26386
Pedobacter (genus) 2
GCA_015100165.3 Candidatus Phytoplasma asiaticum
Mariniplasma (genus) 2
GCA_018866225.1 Candidatus Minimicrobia naudis
Saccharibacteria_genera_incertae_sedis (genus) 1
GCA_020541285.1 Candidatus Gillettellia cooleyia
Enterobacterales (order) 1
GCA_020544305.1 Staphylococcus taiwanensis
Staphylococcus (genus) 4
GCA_025340205.1 Ignicoccus pacificus DSM 13166
Ignicoccus (genus) 1
GCA_025839675.1 Candidatus Lokiarchaeum ossiferum
Archaea (domain) 3
GCA_026153535.1 Sphingobacterium sp. KU25419
Sphingobacterium (genus) 6
GCA_027594465.1 Candidatus Phytoplasma sacchari
Acholeplasmataceae (family) 2
GCA_027945135.1 Candidatus Phytoplasma oryzae
Mariniplasma (genus) 2
GCA_028752135.1 Ehrlichia sp. JZT12
Enterobacteriaceae (family) 1
GCA_032834875.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184
Sulfuracidifex (genus) 1
GCA_038019735.1 Salmonella enterica subsp. enterica serovar Infantis
Salmonella (genus) 7
GCA_038020145.1 Salmonella enterica subsp. enterica serovar Infantis
Salmonella (genus) 7
GCA_038020165.1 Salmonella enterica subsp. enterica serovar Infantis
Salmonella (genus) 7
GCA_038020335.1 Salmonella enterica subsp. enterica serovar Infantis
Salmonella (genus) 7
GCA_038095535.1 Macrococcus psychrotolerans
Macrococcus (genus) 5
GCA_038095545.1 Macrococcus psychrotolerans
Macrococcus (genus) 5
GCA_038446195.1 Erysipelothrix sp. D19-032
Erysipelothrix (genus) 6
GCA_039623705.1 Sulfobacillus thermotolerans
Sulfobacillus (genus) 4
GCA_042140085.1 Nitratireductor sp. ac15
Nitratireductor (genus) 2
GCA_045343845.1 Candidatus Profftella armatura
Oxalobacteraceae (family) 1
GCA_046764185.2 Klebsiella pneumoniae
Klebsiella (genus) 8
GCA_047159365.1 Candidatus Carsonella ruddii (Anomoneura mori)
Candidatus Carsonella (genus) 1
GCA_048288285.1 Arthrobacter sp. N1
Arthrobacter (genus) 4
GCA_048537635.1 Wolbachia endosymbiont of Rhagoletis indifferens
Pseudomonas (genus) 1
GCA_048814765.1 Haemophilus influenzae
Haemophilus (genus) 6
GCA_048814775.1 Haemophilus influenzae
Haemophilus (genus) 6
GCA_048814815.1 Pasteurella multocida
Pasteurella (genus) 6
GCA_048814825.1 Staphylococcus aureus
Staphylococcus (genus) 6
GCA_048814835.1 Escherichia coli HB101
Escherichia/Shigella (genus) 7
GCA_048814845.1 Staphylococcus aureus
Staphylococcus (genus) 6
GCA_902809825.1 Candidatus Hydrogenisulfobacillus filiaventi
Sulfobacillus (genus) 4
GCA_964019725.1 Spiroplasma endosymbiont of Antitype chi
Spiroplasma (genus) 1
GCA_964019825.1 Spiroplasma endosymbiont of Lasioglossum calceatum
Spiroplasma (genus) 1
GCA_964030635.1 Spiroplasma endosymbiont of Polydrusus pterygomalis
Spiroplasma (genus) 1
GCA_964030665.1 Candidatus Tisiphia endosymbiont of Mystacides longicornis
Rickettsia (genus) 1
GCA_964030675.1 Wolbachia endosymbiont (group A) of Scoparia ambigualis
Anaplasmataceae (family) 1
GCA_964030695.1 Candidatus Tisiphia endosymbiont of Stenodema calcarata
Rickettsia (genus) 1
GCA_964030705.1 Wolbachia endosymbiont (group B) of Anania hortulata
Rickettsiales (order) 1
GCA_964030735.1 Candidatus Tisiphia endosymbiont of Ceraclea dissimilis
Rickettsia (genus) 1
GCA_964030825.1 Spiroplasma endosymbiont of Polydrusus pterygomalis
Spiroplasma (genus) 2
GCA_964030885.1 Wolbachia endosymbiont (group A) of Barypeithes pellucidus
Anaplasmataceae (family) 1
GCA_964030905.1 Wolbachia endosymbiont (group A) of Sturmia bella
Anaplasmataceae (family) 1
GCA_964030915.1 Wolbachia endosymbiont (group B) of Eupithecia inturbata
Rickettsiales (order) 1
GCA_964030995.1 Spiroplasma endosymbiont of Tenthredo amoena
Spiroplasma (genus) 1
GCA_964031005.1 Wolbachia endosymbiont (group B) of Schoenobius gigantella
Anaplasmataceae (family) 1
GCA_964031015.1 Candidatus Tremblaya endosymbiont of Planococcus citri
Burkholderiales (order) 2
GCA_964031025.1 Wolbachia endosymbiont (group A) of Microdon myrmicae
Anaplasmataceae (family) 1
GCA_964031055.1 Wolbachia endosymbiont (group A) of Schoenobius gigantella
Rickettsiales (order) 1
GCA_964031095.1 Candidatus Tisiphia endosymbiont of Mystacides longicornis
Rickettsia (genus) 1
GCA_964031125.1 Wolbachia endosymbiont (group A) of Melieria omissa
Anaplasmataceae (family) 1
GCA_964031135.1 Spiroplasma endosymbiont of Aleiodes alternator
Spiroplasma (genus) 2
GCA_964031145.1 Candidatus Tremblaya endosymbiont of Balanococcus diminutus
Burkholderiales (order) 2
GCA_964031175.1 Spiroplasma endosymbiont of Melieria omissa
Spiroplasma (genus) 2
GCA_964031185.1 Wolbachia endosymbiont (group A) of Cerceris ruficornis
Anaplasma (genus) 1
GCA_964031205.1 Spiroplasma endosymbiont of Stenodema calcarata
Spiroplasma (genus) 1
GCA_964031215.1 Candidatus Karelsulcia muelleri
Bacteroidota (phylum) 1
GCA_964031255.1 Candidatus Tremblaya endosymbiont of Pseudococcus viburni
Burkholderiales (order) 2
GCA_964263215.1 Spiroplasma endosymbiont of Rhagonycha fulva
Spiroplasma (genus) 1
GCA_964273555.1 Spiroplasma endosymbiont of Harpalus anxius
Spiroplasma (genus) 2
GCA_965217455.1 Nitratireductor aquimarinus
Nitratireductor (genus) 2
GCF_000005825.2 Alkalihalophilus pseudofirmus OF4
Alkalihalophilus (genus) 7
GCF_000005845.2 Escherichia coli str. K-12 substr. MG1655
Escherichia/Shigella (genus) 7
GCF_000006605.1 Corynebacterium jeikeium K411
Corynebacterium (genus) 3
GCF_000006625.1 Ureaplasma parvum serovar 3 str. ATCC 700970
Ureaplasma (genus) 2
GCF_000006645.1 Yersinia pestis KIM10+
Yersinia (genus) 7
GCF_000006685.1 Chlamydia muridarum str. Nigg
Chlamydia (genus) 2
GCF_000006725.1 Xylella fastidiosa 9a5c
Xylella (genus) 2
GCF_000006745.1 Vibrio cholerae O1 biovar El Tor str. N16961
Vibrio (genus) 8
GCF_000006765.1 Pseudomonas aeruginosa PAO1
Pseudomonas (genus) 4
GCF_000006785.2 Streptococcus pyogenes M1 GAS
Streptococcus (genus) 6
GCF_000006805.1 Halobacterium salinarum NRC-1
Halobacterium (genus) 1
GCF_000006825.1 Pasteurella multocida subsp. multocida str. Pm70
Pasteurella (genus) 6
GCF_000006845.1 Neisseria gonorrhoeae FA 1090
Neisseria (genus) 4
GCF_000006865.1 Lactococcus lactis subsp. lactis Il1403
Lactococcus (genus) 6
GCF_000006885.1 Streptococcus pneumoniae TIGR4
Streptococcus (genus) 4
GCF_000006905.1 Caulobacter vibrioides CB15
Caulobacter (genus) 2
GCF_000006925.2 Shigella flexneri 2a str. 301
Escherichia/Shigella (genus) 7
GCF_000006945.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Salmonella (genus) 7
GCF_000006965.1 Sinorhizobium meliloti 1021
Ensifer (genus) 3
GCF_000006985.1 Chlorobaculum tepidum TLS
Chlorobaculum (genus) 2
GCF_000007005.1 Saccharolobus solfataricus P2
Saccharolobus (genus) 1
GCF_000007025.1 Rickettsia conorii str. Malish 7
Rickettsia (genus) 1
GCF_000007045.1 Streptococcus pneumoniae R6
Streptococcus (genus) 4
GCF_000007065.1 Methanosarcina mazei Go1
Methanosarcina (genus) 3
GCF_000007085.1 Caldanaerobacter subterraneus subsp. tengcongensis MB4
Caldanaerobacter (genus) 4
GCF_000007105.1 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Zymomonas (genus) 3
GCF_000007125.1 Brucella melitensis bv. 1 str. 16M
Brucella (genus) 3
GCF_000007145.1 Xanthomonas campestris pv. campestris str. ATCC 33913
Xanthomonas (genus) 2
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** Some records inherited from rrnDB 3.1.277 only have copy number information for the 23S rRNA but not the 16S rRNA. In these cases, indicated by "n/a", a 16S copy number interpolated from the 23S count is used when searching by 16S copy number, in the above statistics display and when sorting the above table by the 16S column.