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16S copy number statistics
# Genomes Range Mode Median Mean Std dev
48700 1 - 22 7 6.0 5.5 2.8
2025-04-08T16:40:59.619433 image/svg+xml Matplotlib v3.6.3, https://matplotlib.org/
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Data source record id Data source organism name NCBI scientific name (mouse over) RDP taxa 16S copies
GCF_000009425.1 Lactococcus cremoris subsp. cremoris MG1363
Lactococcus (genus) 6
GCF_000009445.1 Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2
Mycobacterium (genus) 1
GCF_000009465.1 Neisseria meningitidis FAM18
Neisseria (genus) 4
GCF_000009485.1 Burkholderia cenocepacia J2315
Burkholderia (genus) 6
GCF_000009505.1 Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Salmonella (genus) 7
GCF_000009525.1 Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
Salmonella (genus) 7
GCF_000009545.1 Streptococcus uberis 0140J
Streptococcus (genus) 5
GCF_000009565.1 Escherichia coli BL21(DE3)
Escherichia/Shigella (genus) 7
GCF_000009585.1 Staphylococcus aureus subsp. aureus ST398
Staphylococcus (genus) 6
GCF_000009605.1 Buchnera aphidicola str. APS (Acyrthosiphon pisum)
Buchnera (genus) 1
GCF_000009625.1 Mesorhizobium japonicum MAFF 303099
Mesorhizobium (genus) 2
GCF_000009645.1 Staphylococcus aureus subsp. aureus N315
Staphylococcus (genus) 5
GCF_000009665.1 Staphylococcus aureus subsp. aureus Mu50
Staphylococcus (genus) 5
GCF_000009685.1 Clostridium perfringens str. 13
Clostridium sensu stricto (genus) 10
GCF_000009705.1 Nostoc sp. PCC 7120 = FACHB-418
Nostocaceae (family) 4
GCF_000009725.1 Synechocystis sp. PCC 6803
Cyanophyceae (class) 2
GCF_000009745.1 Vibrio vulnificus YJ016
Vibrio (genus) 9
GCF_000009765.2 Streptomyces avermitilis MA-4680 = NBRC 14893
Streptomyces (genus) 6
GCF_000009785.1 Geobacillus kaustophilus HTA426
Geobacillus (genus) 9
GCF_000009805.1 Nocardia farcinica IFM 10152
Nocardia (genus) 3
GCF_000009825.1 Shouchella clausii KSM-K16
Shouchella (genus) 7
GCF_000009865.1 Staphylococcus haemolyticus JCSC1435
Staphylococcus (genus) 5
GCF_000009885.1 Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Klebsiella (genus) 8
GCF_000009905.1 Symbiobacterium thermophilum IAM 14863
Symbiobacterium (genus) 6
GCF_000009925.1 Bacteroides fragilis YCH46
Bacteroides (genus) 6
GCF_000009945.1 Chlamydia felis Fe/C-56
Chlamydia (genus) 1
GCF_000009965.1 Thermococcus kodakarensis KOD1
Thermococcus (genus) 1
GCF_000009985.1 Paramagnetospirillum magneticum AMB-1
Magnetospirillum (genus) 2
GCF_000010005.1 Limosilactobacillus reuteri subsp. reuteri JCM 1112
Limosilactobacillus (genus) 6
GCF_000010025.1 Xanthomonas oryzae pv. oryzae MAFF 311018
Xanthomonas (genus) 2
GCF_000010045.1 Desulfitobacterium hafniense Y51
Desulfitobacterium (genus) 6
GCF_000010065.1 Synechococcus elongatus PCC 6301
Synechococcus (genus) 2
GCF_000010085.1 Sodalis glossinidius str. 'morsitans'
Sodalis (genus) 7
GCF_000010105.1 Rhodococcus erythropolis PR4
Rhodococcus (genus) 5
GCF_000010125.1 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292
Staphylococcus (genus) 6
GCF_000010145.1 Limosilactobacillus fermentum IFO 3956
Limosilactobacillus (genus) 5
GCF_000010165.1 Brevibacillus brevis NBRC 100599
Brevibacillus (genus) 15
GCF_000010185.1 Finegoldia magna ATCC 29328
Finegoldia (genus) 4
GCF_000010205.1 Orientia tsutsugamushi str. Ikeda
Orientia (genus) 1
GCF_000010225.1 Corynebacterium glutamicum R
Corynebacterium (genus) 6
GCF_000010245.2 Escherichia coli str. K-12 substr. W3110
Escherichia/Shigella (genus) 7
GCF_000010265.1 Clostridium kluyveri NBRC 12016
Clostridium sensu stricto (genus) 7
GCF_000010285.1 Kocuria rhizophila DC2201
Kocuria (genus) 3
GCF_000010305.1 Gemmatimonas aurantiaca T-27
Gemmatimonas (genus) 1
GCF_000010325.1 Nitratiruptor sp. SB155-2
Nitratiruptor (genus) 3
GCF_000010345.1 Sulfurovum sp. NBC37-1
Sulfurovum (genus) 3
GCF_000010365.1 Candidatus Carsonella ruddii PV
Candidatus Carsonella (genus) 1
GCF_000010385.1 Escherichia coli SE11
Escherichia/Shigella (genus) 7
GCF_000010405.1 Candidatus Vesicomyosocius okutanii
Gammaproteobacteria (class) 1
GCF_000010425.1 Bifidobacterium adolescentis ATCC 15703
Bifidobacterium (genus) 5
GCF_000010445.1 Staphylococcus aureus subsp. aureus Mu3
Staphylococcus (genus) 5
GCF_000010465.1 Staphylococcus aureus subsp. aureus str. Newman
Staphylococcus (genus) 5
GCF_000010485.1 Escherichia coli SE15
Escherichia/Shigella (genus) 7
GCF_000010505.1 Porphyromonas gingivalis ATCC 33277
Porphyromonas (genus) 4
GCF_000010525.1 Azorhizobium caulinodans ORS 571
Azorhizobium (genus) 3
GCF_000010545.1 Burkholderia multivorans ATCC 17616
Burkholderia (genus) 5
GCF_000010585.1 Macrococcoides caseolyticum JCSC5402
Macrococcus (genus) 4
GCF_000010605.1 Streptomyces griseus subsp. griseus NBRC 13350
Streptomyces (genus) 6
GCF_000010625.1 Microcystis aeruginosa NIES-843
Microcystis (genus) 2
GCF_000010645.1 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
Bacteroidales (order) 2
GCF_000010665.1 Solidesulfovibrio magneticus RS-1
Solidesulfovibrio (genus) 3
GCF_000010685.1 Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172
Mycobacterium (genus) 1
GCF_000010705.1 Streptococcus dysgalactiae subsp. equisimilis GGS_124
Streptococcus (genus) 5
GCF_000010725.1 Azospirillum sp. B510
Azospirillum (genus) 9
GCF_000010745.1 Escherichia coli O103:H2 str. 12009
Escherichia/Shigella (genus) 7
GCF_000010765.1 Escherichia coli O111:H- str. 11128
Escherichia/Shigella (genus) 7
GCF_000010785.1 Hydrogenobacter thermophilus TK-6
Hydrogenobacter (genus) 1
GCF_000010805.1 Rhodococcus opacus B4
Rhodococcus (genus) 4
GCF_000010825.1 Acetobacter pasteurianus IFO 3283-01
Acetobacter (genus) 5
GCF_000010845.1 Acetobacter pasteurianus IFO 3283-03
Acetobacter (genus) 5
GCF_000010865.1 Acetobacter pasteurianus IFO 3283-07
Acetobacter (genus) 5
GCF_000010885.1 Acetobacter pasteurianus IFO 3283-22
Acetobacter (genus) 5
GCF_000010905.1 Acetobacter pasteurianus IFO 3283-26
Acetobacter (genus) 5
GCF_000010925.1 Acetobacter pasteurianus IFO 3283-32
Acetobacter (genus) 5
GCF_000010945.1 Acetobacter pasteurianus IFO 3283-01-42C
Acetobacter (genus) 4
GCF_000010965.1 Acetobacter pasteurianus IFO 3283-12
Acetobacter (genus) 5
GCF_000010985.1 Deferribacter desulfuricans SSM1
Deferribacter (genus) 2
GCF_000011005.1 Methanocella paludicola SANAE
Methanocella (genus) 2
GCF_000011025.1 Rothia mucilaginosa DY-18
Rothia (genus) 3
GCF_000011045.1 Lacticaseibacillus rhamnosus GG
Lacticaseibacillus (genus) 5
GCF_000011065.1 Bacteroides thetaiotaomicron VPI-5482
Bacteroides (genus) 5
GCF_000011085.1 Haloarcula marismortui ATCC 43049
Haloarcula (genus) 3
GCF_000011105.1 Pyrococcus horikoshii OT3
Pyrococcus (genus) 1
GCF_000011125.1 Aeropyrum pernix K1
Aeropyrum (genus) 1
GCF_000011145.1 Halalkalibacterium halodurans C-125
Halalkalibacterium (genus) 8
GCF_000011165.1 Chlamydia pneumoniae J138
Chlamydia (genus) 1
GCF_000011185.1 Thermoplasma volcanium GSS1
Thermoplasma (genus) 1
GCF_000011205.1 Sulfurisphaera tokodaii str. 7
Sulfurisphaera (genus) 1
GCF_000011225.1 Malacoplasma penetrans HF-2
Malacoplasma (genus) 1
GCF_000011245.1 Oceanobacillus iheyensis HTE831
Oceanobacillus (genus) 7
GCF_000011265.1 Staphylococcus aureus subsp. aureus MW2
Staphylococcus (genus) 6
GCF_000011285.1 Streptococcus pyogenes SSI-1
Streptococcus (genus) 5
GCF_000011305.1 Corynebacterium efficiens YS-314
Corynebacterium (genus) 5
GCF_000011325.1 Corynebacterium glutamicum ATCC 13032
Corynebacterium (genus) 6
GCF_000011345.1 Thermosynechococcus vestitus BP-1
Cyanophyceae (class) 1
GCF_000011365.1 Bradyrhizobium diazoefficiens USDA 110
Bradyrhizobium (genus) 1
GCF_000011385.1 Gloeobacter violaceus PCC 7421
Gloeobacter (genus) 1
GCF_000011405.1 Francisella tularensis subsp. holarctica OSU18
Francisella (genus) 3
GCF_000011445.1 Mycoplasma mycoides subsp. mycoides SC str. PG1
Mycoplasma (genus) 2
GCF_000011465.1 Prochlorococcus marinus subsp. pastoris str. CCMP1986
Prochlorococcus (genus) 1
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** Some records inherited from rrnDB 3.1.277 only have copy number information for the 23S rRNA but not the 16S rRNA. In these cases, indicated by "n/a", a 16S copy number interpolated from the 23S count is used when searching by 16S copy number, in the above statistics display and when sorting the above table by the 16S column.