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16S copy number statistics
# Genomes Range Mode Median Mean Std dev
48700 1 - 22 7 6.0 5.5 2.8
2025-04-08T16:40:59.619433 image/svg+xml Matplotlib v3.6.3, https://matplotlib.org/
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Data source record id Data source organism name NCBI scientific name (mouse over) RDP taxa 16S copies
GCF_000007165.1 Xanthomonas citri pv. citri str. 306
Xanthomonas (genus) 2
GCF_000007185.1 Methanopyrus kandleri AV19
Methanopyrus (genus) 1
GCF_000007205.1 Chlamydia pneumoniae TW-183
Chlamydia (genus) 1
GCF_000007225.1 Pyrobaculum aerophilum str. IM2
Pyrobaculum (genus) 1
GCF_000007245.1 Xylella fastidiosa Temecula1
Xylella (genus) 2
GCF_000007265.1 Streptococcus agalactiae 2603V/R
Streptococcus (genus) 7
GCF_000007285.1 Streptococcus pyogenes MGAS8232
Streptococcus (genus) 6
GCF_000007305.1 Pyrococcus furiosus DSM 3638
Pyrococcus (genus) 1
GCF_000007345.1 Methanosarcina acetivorans C2A
Methanosarcina (genus) 3
GCF_000007365.1 Buchnera aphidicola str. Sg (Schizaphis graminum)
Buchnera (genus) 1
GCF_000007405.1 Shigella flexneri 2a str. 2457T
Escherichia/Shigella (genus) 7
GCF_000007425.1 Streptococcus pyogenes MGAS315
Streptococcus (genus) 6
GCF_000007445.1 Escherichia coli CFT073
Escherichia/Shigella (genus) 7
GCF_000007465.2 Streptococcus mutans UA159
Streptococcus (genus) 5
GCF_000007485.1 Tropheryma whipplei str. Twist
Tropheryma (genus) 1
GCF_000007505.1 Brucella suis 1330
Brucella (genus) 3
GCF_000007525.1 Bifidobacterium longum NCC2705
Bifidobacterium (genus) 4
GCF_000007545.1 Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Salmonella (genus) 7
GCF_000007565.2 Pseudomonas putida KT2440
Pseudomonas (genus) 7
GCF_000007585.1 Porphyromonas gingivalis W83
Porphyromonas (genus) 4
GCF_000007605.1 Chlamydia caviae GPIC
Chlamydia (genus) 1
GCF_000007625.1 Clostridium tetani E88
Clostridium sensu stricto (genus) 6
GCF_000007645.1 Staphylococcus epidermidis ATCC 12228
Staphylococcus (genus) 5
GCF_000007665.1 Leifsonia xyli subsp. xyli str. CTCB07
Leifsonia (genus) 1
GCF_000007685.1 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Leptospira (genus) 2
GCF_000007705.1 Chromobacterium violaceum ATCC 12472
Chromobacterium (genus) 8
GCF_000007725.1 Buchnera aphidicola str. Bp (Baizongia pistaciae)
Buchnera (genus) 1
GCF_000007745.1 [Mannheimia] succiniciproducens MBEL55E
Basfia (genus) 6
GCF_000007765.2 Coxiella burnetii RSA 493
Coxiella (genus) 1
GCF_000007785.1 Enterococcus faecalis V583
Enterococcus (genus) 4
GCF_000007805.1 Pseudomonas syringae pv. tomato str. DC3000
Pseudomonas (genus) 5
GCF_000007825.1 Bacillus cereus ATCC 14579
Bacillus (genus) 13
GCF_000007845.1 Bacillus anthracis str. Ames
Bacillus (genus) 11
GCF_000007865.1 Mycobacterium avium subsp. paratuberculosis K-10
Mycobacterium (genus) 1
GCF_000007885.1 Yersinia pestis biovar Microtus str. 91001
Yersinia (genus) 7
GCF_000007905.1 Helicobacter hepaticus ATCC 51449
Helicobacter (genus) 1
GCF_000007925.1 Prochlorococcus marinus subsp. marinus str. CCMP1375
Prochlorococcus (genus) 1
GCF_000007945.1 [Haemophilus] ducreyi 35000HP
Actinobacillus (genus) 6
GCF_000007985.2 Geobacter sulfurreducens PCA
Geobacter (genus) 2
GCF_000008025.1 Wolbachia endosymbiont of Drosophila melanogaster
Anaplasma (genus) 1
GCF_000008045.1 Rickettsia typhi str. Wilmington
Rickettsia (genus) 1
GCF_000008065.1 Lactobacillus johnsonii NCC 533
Lactobacillus (genus) 6
GCF_000008105.1 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Salmonella (genus) 7
GCF_000008125.1 Thermus thermophilus HB27
Thermus (genus) 2
GCF_000008145.1 Brucella abortus bv. 1 str. 9-941
Brucella (genus) 3
GCF_000008165.1 Bacillus anthracis str. Sterne
Bacillus (genus) 11
GCF_000008185.1 Treponema denticola ATCC 35405
Treponema (genus) 2
GCF_000008205.1 Mesomycoplasma hyopneumoniae J
Mesomycoplasma (genus) 1
GCF_000008225.1 Mesomycoplasma hyopneumoniae 7448
Mesomycoplasma (genus) 1
GCF_000008245.1 Mycoplasmopsis synoviae 53
Mycoplasmopsis (genus) 2
GCF_000008265.1 Picrophilus oshimae DSM 9789
Picrophilus (genus) 1
GCF_000008285.1 Listeria monocytogenes serotype 4b str. F2365
Listeria (genus) 6
GCF_000008305.1 Mesoplasma florum L1
Mesoplasma (genus) 2
GCF_000008325.1 Methylococcus capsulatus str. Bath
Methylococcus (genus) 2
GCF_000008345.1 Cutibacterium acnes KPA171202
Cutibacterium (genus) 3
GCF_000008365.1 Mycoplasma mobile 163K
Mesomycoplasma (genus) 1
GCF_000008385.1 Wolbachia endosymbiont strain TRS of Brugia malayi
Anaplasma (genus) 1
GCF_000008405.1 Mesomycoplasma hyopneumoniae 232
Mesomycoplasma (genus) 1
GCF_000008425.1 Bacillus licheniformis DSM 13 = ATCC 14580
Bacillus (genus) 7
GCF_000008445.1 Bacillus anthracis str. 'Ames Ancestor'
Bacillus (genus) 11
GCF_000008465.1 Idiomarina loihiensis L2TR
Idiomarina (genus) 4
GCF_000008485.1 Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Legionella (genus) 3
GCF_000008505.1 [Bacillus thuringiensis] serovar konkukian str. 97-27
Bacillus (genus) 14
GCF_000008545.1 Thermotoga maritima MSB8
Thermotoga (genus) 1
GCF_000008565.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Deinococcus (genus) 3
GCF_000008585.1 Mycobacterium tuberculosis CDC1551
Mycobacterium (genus) 1
GCF_000008605.1 Treponema pallidum subsp. pallidum str. Nichols
Treponemataceae (family) 2
GCF_000008625.1 Aquifex aeolicus VF5
Aquifex (genus) 2
GCF_000008645.1 Methanothermobacter thermautotrophicus str. Delta H
Methanothermobacter (genus) 2
GCF_000008665.1 Archaeoglobus fulgidus DSM 4304
Archaeoglobus (genus) 1
GCF_000008685.2 Borreliella burgdorferi B31
Borrelia (genus) 1
GCF_000008725.1 Chlamydia trachomatis D/UW-3/CX
Chlamydia (genus) 2
GCF_000008745.1 Chlamydia pneumoniae CWL029
Chlamydia (genus) 1
GCF_000008765.1 Clostridium acetobutylicum ATCC 824
Clostridium sensu stricto (genus) 11
GCF_000008785.1 Helicobacter pylori J99
Helicobacter (genus) 2
GCF_000008805.1 Neisseria meningitidis MC58
Neisseria (genus) 4
GCF_000008865.2 Escherichia coli O157:H7 str. Sakai
Escherichia/Shigella (genus) 7
GCF_000008925.1 Ligilactobacillus salivarius UCC118
Ligilactobacillus (genus) 7
GCF_000008945.1 Bifidobacterium longum DJO10A
Bifidobacterium (genus) 4
GCF_000008985.1 Francisella tularensis subsp. tularensis SCHU S4
Francisella (genus) 3
GCF_000009005.1 Staphylococcus aureus RF122
Staphylococcus (genus) 5
GCF_000009025.1 Dehalococcoides mccartyi CBDB1
Dehalococcoides (genus) 1
GCF_000009045.1 Bacillus subtilis subsp. subtilis str. 168
Bacillus (genus) 10
GCF_000009065.1 Yersinia pestis CO92
Yersinia (genus) 6
GCF_000009085.1 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Campylobacter (genus) 3
GCF_000009105.1 Neisseria meningitidis Z2491
Neisseria (genus) 4
GCF_000009125.1 Ralstonia pseudosolanacearum GMI1000
Ralstonia (genus) 4
GCF_000009145.1 Nitrosomonas europaea ATCC 19718
Nitrosomonas (genus) 1
GCF_000009165.1 Xanthomonas euvesicatoria pv. vesicatoria str. 85-10
Xanthomonas (genus) 2
GCF_000009185.1 Haloquadratum walsbyi DSM 16790
Haloquadratum (genus) 2
GCF_000009205.2 Clostridioides difficile 630
Clostridioides (genus) 11
GCF_000009245.1 Francisella tularensis subsp. holarctica LVS
Francisella (genus) 3
GCF_000009265.1 Rhizobium johnstonii 3841
Rhizobium (genus) 3
GCF_000009285.1 Cupriavidus necator H16
Cupriavidus (genus) 5
GCF_000009305.1 Helicobacter acinonychis str. Sheeba
Helicobacter (genus) 2
GCF_000009325.1 Francisella tularensis subsp. tularensis FSC198
Francisella (genus) 3
GCF_000009345.1 Yersinia enterocolitica subsp. enterocolitica 8081
Yersinia (genus) 7
GCF_000009365.1 Alcanivorax borkumensis SK2
Alcanivorax (genus) 3
GCF_000009385.1 Streptococcus pyogenes str. Manfredo
Streptococcus (genus) 6
GCF_000009405.1 Staphylococcus carnosus subsp. carnosus TM300
Staphylococcus (genus) 5
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** Some records inherited from rrnDB 3.1.277 only have copy number information for the 23S rRNA but not the 16S rRNA. In these cases, indicated by "n/a", a 16S copy number interpolated from the 23S count is used when searching by 16S copy number, in the above statistics display and when sorting the above table by the 16S column.