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16S copy number statistics
# Genomes Range Mode Median Mean Std dev
48700 1 - 22 7 6.0 5.5 2.8
2025-04-08T16:40:59.619433 image/svg+xml Matplotlib v3.6.3, https://matplotlib.org/
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Data source record id Data source organism name NCBI scientific name (mouse over) RDP taxa 16S copies
GCF_000009405.1 Staphylococcus carnosus subsp. carnosus TM300
Staphylococcus (genus) 5
GCF_000009385.1 Streptococcus pyogenes str. Manfredo
Streptococcus (genus) 6
GCF_000009365.1 Alcanivorax borkumensis SK2
Alcanivorax (genus) 3
GCF_000009345.1 Yersinia enterocolitica subsp. enterocolitica 8081
Yersinia (genus) 7
GCF_000009325.1 Francisella tularensis subsp. tularensis FSC198
Francisella (genus) 3
GCF_000009305.1 Helicobacter acinonychis str. Sheeba
Helicobacter (genus) 2
GCF_000009285.1 Cupriavidus necator H16
Cupriavidus (genus) 5
GCF_000009265.1 Rhizobium johnstonii 3841
Rhizobium (genus) 3
GCF_000009245.1 Francisella tularensis subsp. holarctica LVS
Francisella (genus) 3
GCF_000009205.2 Clostridioides difficile 630
Clostridioides (genus) 11
GCF_000009185.1 Haloquadratum walsbyi DSM 16790
Haloquadratum (genus) 2
GCF_000009165.1 Xanthomonas euvesicatoria pv. vesicatoria str. 85-10
Xanthomonas (genus) 2
GCF_000009145.1 Nitrosomonas europaea ATCC 19718
Nitrosomonas (genus) 1
GCF_000009125.1 Ralstonia pseudosolanacearum GMI1000
Ralstonia (genus) 4
GCF_000009105.1 Neisseria meningitidis Z2491
Neisseria (genus) 4
GCF_000009085.1 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Campylobacter (genus) 3
GCF_000009065.1 Yersinia pestis CO92
Yersinia (genus) 6
GCF_000009045.1 Bacillus subtilis subsp. subtilis str. 168
Bacillus (genus) 10
GCF_000009025.1 Dehalococcoides mccartyi CBDB1
Dehalococcoides (genus) 1
GCF_000009005.1 Staphylococcus aureus RF122
Staphylococcus (genus) 5
GCF_000008985.1 Francisella tularensis subsp. tularensis SCHU S4
Francisella (genus) 3
GCF_000008945.1 Bifidobacterium longum DJO10A
Bifidobacterium (genus) 4
GCF_000008925.1 Ligilactobacillus salivarius UCC118
Ligilactobacillus (genus) 7
GCF_000008865.2 Escherichia coli O157:H7 str. Sakai
Escherichia/Shigella (genus) 7
GCF_000008805.1 Neisseria meningitidis MC58
Neisseria (genus) 4
GCF_000008785.1 Helicobacter pylori J99
Helicobacter (genus) 2
GCF_000008765.1 Clostridium acetobutylicum ATCC 824
Clostridium sensu stricto (genus) 11
GCF_000008745.1 Chlamydia pneumoniae CWL029
Chlamydia (genus) 1
GCF_000008725.1 Chlamydia trachomatis D/UW-3/CX
Chlamydia (genus) 2
GCF_000008685.2 Borreliella burgdorferi B31
Borrelia (genus) 1
GCF_000008665.1 Archaeoglobus fulgidus DSM 4304
Archaeoglobus (genus) 1
GCF_000008645.1 Methanothermobacter thermautotrophicus str. Delta H
Methanothermobacter (genus) 2
GCF_000008625.1 Aquifex aeolicus VF5
Aquifex (genus) 2
GCF_000008605.1 Treponema pallidum subsp. pallidum str. Nichols
Treponemataceae (family) 2
GCF_000008585.1 Mycobacterium tuberculosis CDC1551
Mycobacterium (genus) 1
GCF_000008565.1 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Deinococcus (genus) 3
GCF_000008545.1 Thermotoga maritima MSB8
Thermotoga (genus) 1
GCF_000008505.1 [Bacillus thuringiensis] serovar konkukian str. 97-27
Bacillus (genus) 14
GCF_000008485.1 Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Legionella (genus) 3
GCF_000008465.1 Idiomarina loihiensis L2TR
Idiomarina (genus) 4
GCF_000008445.1 Bacillus anthracis str. 'Ames Ancestor'
Bacillus (genus) 11
GCF_000008425.1 Bacillus licheniformis DSM 13 = ATCC 14580
Bacillus (genus) 7
GCF_000008405.1 Mesomycoplasma hyopneumoniae 232
Mesomycoplasma (genus) 1
GCF_000008385.1 Wolbachia endosymbiont strain TRS of Brugia malayi
Anaplasma (genus) 1
GCF_000008365.1 Mycoplasma mobile 163K
Mesomycoplasma (genus) 1
GCF_000008345.1 Cutibacterium acnes KPA171202
Cutibacterium (genus) 3
GCF_000008325.1 Methylococcus capsulatus str. Bath
Methylococcus (genus) 2
GCF_000008305.1 Mesoplasma florum L1
Mesoplasma (genus) 2
GCF_000008285.1 Listeria monocytogenes serotype 4b str. F2365
Listeria (genus) 6
GCF_000008265.1 Picrophilus oshimae DSM 9789
Picrophilus (genus) 1
GCF_000008245.1 Mycoplasmopsis synoviae 53
Mycoplasmopsis (genus) 2
GCF_000008225.1 Mesomycoplasma hyopneumoniae 7448
Mesomycoplasma (genus) 1
GCF_000008205.1 Mesomycoplasma hyopneumoniae J
Mesomycoplasma (genus) 1
GCF_000008185.1 Treponema denticola ATCC 35405
Treponema (genus) 2
GCF_000008165.1 Bacillus anthracis str. Sterne
Bacillus (genus) 11
GCF_000008145.1 Brucella abortus bv. 1 str. 9-941
Brucella (genus) 3
GCF_000008125.1 Thermus thermophilus HB27
Thermus (genus) 2
GCF_000008105.1 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Salmonella (genus) 7
GCF_000008065.1 Lactobacillus johnsonii NCC 533
Lactobacillus (genus) 6
GCF_000008045.1 Rickettsia typhi str. Wilmington
Rickettsia (genus) 1
GCF_000008025.1 Wolbachia endosymbiont of Drosophila melanogaster
Anaplasma (genus) 1
GCF_000007985.2 Geobacter sulfurreducens PCA
Geobacter (genus) 2
GCF_000007945.1 [Haemophilus] ducreyi 35000HP
Actinobacillus (genus) 6
GCF_000007925.1 Prochlorococcus marinus subsp. marinus str. CCMP1375
Prochlorococcus (genus) 1
GCF_000007905.1 Helicobacter hepaticus ATCC 51449
Helicobacter (genus) 1
GCF_000007885.1 Yersinia pestis biovar Microtus str. 91001
Yersinia (genus) 7
GCF_000007865.1 Mycobacterium avium subsp. paratuberculosis K-10
Mycobacterium (genus) 1
GCF_000007845.1 Bacillus anthracis str. Ames
Bacillus (genus) 11
GCF_000007825.1 Bacillus cereus ATCC 14579
Bacillus (genus) 13
GCF_000007805.1 Pseudomonas syringae pv. tomato str. DC3000
Pseudomonas (genus) 5
GCF_000007785.1 Enterococcus faecalis V583
Enterococcus (genus) 4
GCF_000007765.2 Coxiella burnetii RSA 493
Coxiella (genus) 1
GCF_000007745.1 [Mannheimia] succiniciproducens MBEL55E
Basfia (genus) 6
GCF_000007725.1 Buchnera aphidicola str. Bp (Baizongia pistaciae)
Buchnera (genus) 1
GCF_000007705.1 Chromobacterium violaceum ATCC 12472
Chromobacterium (genus) 8
GCF_000007685.1 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Leptospira (genus) 2
GCF_000007665.1 Leifsonia xyli subsp. xyli str. CTCB07
Leifsonia (genus) 1
GCF_000007645.1 Staphylococcus epidermidis ATCC 12228
Staphylococcus (genus) 5
GCF_000007625.1 Clostridium tetani E88
Clostridium sensu stricto (genus) 6
GCF_000007605.1 Chlamydia caviae GPIC
Chlamydia (genus) 1
GCF_000007585.1 Porphyromonas gingivalis W83
Porphyromonas (genus) 4
GCF_000007565.2 Pseudomonas putida KT2440
Pseudomonas (genus) 7
GCF_000007545.1 Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Salmonella (genus) 7
GCF_000007525.1 Bifidobacterium longum NCC2705
Bifidobacterium (genus) 4
GCF_000007505.1 Brucella suis 1330
Brucella (genus) 3
GCF_000007485.1 Tropheryma whipplei str. Twist
Tropheryma (genus) 1
GCF_000007465.2 Streptococcus mutans UA159
Streptococcus (genus) 5
GCF_000007445.1 Escherichia coli CFT073
Escherichia/Shigella (genus) 7
GCF_000007425.1 Streptococcus pyogenes MGAS315
Streptococcus (genus) 6
GCF_000007405.1 Shigella flexneri 2a str. 2457T
Escherichia/Shigella (genus) 7
GCF_000007365.1 Buchnera aphidicola str. Sg (Schizaphis graminum)
Buchnera (genus) 1
GCF_000007345.1 Methanosarcina acetivorans C2A
Methanosarcina (genus) 3
GCF_000007305.1 Pyrococcus furiosus DSM 3638
Pyrococcus (genus) 1
GCF_000007285.1 Streptococcus pyogenes MGAS8232
Streptococcus (genus) 6
GCF_000007265.1 Streptococcus agalactiae 2603V/R
Streptococcus (genus) 7
GCF_000007245.1 Xylella fastidiosa Temecula1
Xylella (genus) 2
GCF_000007225.1 Pyrobaculum aerophilum str. IM2
Pyrobaculum (genus) 1
GCF_000007205.1 Chlamydia pneumoniae TW-183
Chlamydia (genus) 1
GCF_000007185.1 Methanopyrus kandleri AV19
Methanopyrus (genus) 1
GCF_000007165.1 Xanthomonas citri pv. citri str. 306
Xanthomonas (genus) 2
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** Some records inherited from rrnDB 3.1.277 only have copy number information for the 23S rRNA but not the 16S rRNA. In these cases, indicated by "n/a", a 16S copy number interpolated from the 23S count is used when searching by 16S copy number, in the above statistics display and when sorting the above table by the 16S column.