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16S copy number statistics
# Genomes Range Mode Median Mean Std dev
48700 1 - 22 7 6.0 5.5 2.8
2025-04-08T16:40:59.619433 image/svg+xml Matplotlib v3.6.3, https://matplotlib.org/
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Data source record id Data source organism name NCBI scientific name (mouse over) RDP taxa 16S copies
GCF_002356235.1 Photobacterium damselae subsp. piscicida
Photobacterium (genus) 15
GCF_002356195.1 Actinomyces sp. Chiba101
Actinomyces (genus) 3
GCF_002356175.1 Staphylococcus capitis
Staphylococcus (genus) 5
GCF_002356155.1 Microbacterium sp. TPU 3598
Microbacterium (genus) 2
GCF_002356115.1 Candidatus Nitrosoglobus terrae
Nitrosococcus (genus) 2
GCF_002356095.1 Pseudomonas putida
Pseudomonas (genus) 7
GCF_002356075.1 Mycoplasmopsis bovigenitalium
Mycoplasmopsis (genus) 2
GCF_002356055.1 Streptococcus intermedius
Streptococcus (genus) 4
GCF_002356035.1 Nocardia seriolae
Nocardia (genus) 4
GCF_002356015.1 Mycobacterium tuberculosis
Mycobacterium (genus) 1
GCF_002355975.1 Lysobacter enzymogenes
Lysobacter (genus) 2
GCF_002355955.1 Candidatus Desulfovibrio trichonymphae
Desulfovibrio (genus) 2
GCF_002355895.1 Streptococcus sp. NPS 308
Streptococcus (genus) 4
GCF_002355875.1 Pseudomonas chlororaphis subsp. aurantiaca
Pseudomonas (genus) 5
GCF_002355855.1 Sphingobium cloacae
Sphingobium (genus) 2
GCF_002355835.1 Candidatus Endomicrobiellum trichonymphae
Endomicrobium (genus) 1
GCF_002355815.1 Streptococcus pyogenes
Streptococcus (genus) 5
GCF_002355795.1 Clostridium perfringens
Clostridium sensu stricto (genus) 10
GCF_002355775.1 Mycobacterium ulcerans subsp. shinshuense
Mycobacterium (genus) 1
GCF_002355755.1 Enterococcus faecalis
Enterococcus (genus) 4
GCF_002355735.1 Sulfuricaulis limicola
Sulfuricaulis (genus) 1
GCF_002355715.1 Mycoplasmoides pneumoniae
Mycoplasmoides (genus) 1
GCF_002355695.1 Mycoplasmoides pneumoniae
Mycoplasmoides (genus) 1
GCF_002355675.1 Corynebacterium glutamicum
Corynebacterium (genus) 6
GCF_002355655.1 Halorubrum trapanicum
Halorubrum (genus) 2
GCF_002355635.1 Halopenitus persicus
Halopenitus (genus) 2
GCF_002355595.1 Filimonas lacunae
Filimonas (genus) 5
GCF_002355575.1 Lactococcus formosensis
Lactococcus (genus) 5
GCF_002355555.1 Hafnia sp. CBA7124
Hafnia (genus) 8
GCF_002355535.1 Aurantimicrobium minutum
Aurantimicrobium (genus) 1
GCF_002355515.1 Methylorubrum populi
Methylorubrum (genus) 5
GCF_002355475.1 Metapseudomonas furukawaii
Pseudomonas (genus) 5
GCF_002355435.1 Mucilaginibacter gotjawali
Mucilaginibacter (genus) 2
GCF_002355415.1 Sulfurifustis variabilis
Sulfurifustis (genus) 1
GCF_002355395.1 Microcella alkaliphila
Microcella (genus) 1
GCF_002355375.1 Aneurinibacillus soli
Aneurinibacillus (genus) 17
GCF_002355355.1 Staphylococcus aureus
Staphylococcus (genus) 6
GCF_002355335.1 Variibacter gotjawalensis
Variibacter (genus) 1
GCF_002355315.1 Pseudomonas frederiksbergensis
Pseudomonas (genus) 6
GCF_002355295.1 Lysobacter capsici
Lysobacter (genus) 2
GCF_002355275.1 Rhizorhabdus dicambivorans
Rhizorhabdus (genus) 2
GCF_002355215.1 Streptococcus troglodytae
Streptococcus (genus) 5
GCF_002355195.1 Prevotella intermedia
Prevotella (genus) 4
GCF_002355175.1 Streptococcus pyogenes
Streptococcus (genus) 5
GCF_002355155.1 Corynebacterium suranareeae
Corynebacterium (genus) 6
GCF_002355135.1 Blattabacterium cuenoti BPAY
Flavobacteriales (order) 1
GCF_002354895.1 Thauera sp. K11
Thauera (genus) 4
GCF_002354875.1 Actinosynnema pretiosum
Actinosynnema (genus) 5
GCF_002346205.1 Burkholderia mallei
Burkholderia (genus) 4
GCF_002346185.1 Burkholderia mallei
Burkholderia (genus) 4
GCF_002346165.1 Burkholderia mallei
Burkholderia (genus) 4
GCF_002346145.1 Burkholderia mallei
Burkholderia (genus) 4
GCF_002346125.1 Burkholderia mallei
Burkholderia (genus) 4
GCF_002346105.1 Burkholderia mallei
Burkholderia (genus) 4
GCF_002346085.1 Burkholderia mallei
Burkholderia (genus) 4
GCF_002346065.1 Burkholderia mallei
Burkholderia (genus) 4
GCF_002346045.1 Burkholderia mallei
Burkholderia (genus) 4
GCF_002346025.1 Burkholderia mallei
Burkholderia (genus) 4
GCF_002346005.1 Burkholderia mallei
Burkholderia (genus) 4
GCF_002345985.1 Burkholderia mallei
Burkholderia (genus) 4
GCF_002334685.1 Desulfovibrio sp. G11
Desulfovibrio (genus) 3
GCF_002334625.1 Enterococcus faecium
Enterococcus (genus) 6
GCF_002327205.1 Clostridium chauvoei
Clostridium sensu stricto (genus) 9
GCF_002327185.1 Clostridium chauvoei
Clostridium sensu stricto (genus) 9
GCF_002327165.1 Bacillus velezensis
Bacillus (genus) 9
GCF_002327145.1 Janthinobacterium svalbardensis
Janthinobacterium (genus) 8
GCF_002327105.1 Luteimonas chenhongjianii
Luteimonas (genus) 2
GCF_002327085.1 Neisseria weixii
Neisseria (genus) 3
GCF_002313125.1 Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella (genus) 7
GCF_002313105.1 Salmonella enterica
Salmonella (genus) 7
GCF_002313085.1 Salmonella enterica
Salmonella (genus) 7
GCF_002313065.1 Aeromonas salmonicida subsp. masoucida
Aeromonas (genus) 10
GCF_002313025.1 Vibrio cholerae
Vibrio (genus) 9
GCF_002312985.1 Clostridium perfringens
Clostridium sensu stricto (genus) 10
GCF_002310915.1 Bordetella pertussis
Bordetella (genus) 3
GCF_002310895.1 Proteus mirabilis
Proteus (genus) 7
GCF_002310875.1 Proteus mirabilis
Proteus (genus) 7
GCF_002310855.1 Pseudoalteromonas agarivorans DSM 14585
Pseudoalteromonas (genus) 8
GCF_002310835.1 Pseudoalteromonas tetraodonis
Pseudoalteromonas (genus) 8
GCF_002310815.1 Pseudoalteromonas tunicata
Pseudoalteromonas (genus) 10
GCF_002310795.1 Pseudoalteromonas issachenkonii
Pseudoalteromonas (genus) 8
GCF_002310735.1 Escherichia coli
Escherichia/Shigella (genus) 7
GCF_002310715.1 Escherichia coli
Escherichia/Shigella (genus) 7
GCF_002310695.1 Escherichia coli
Escherichia/Shigella (genus) 7
GCF_002310675.1 Escherichia coli
Escherichia/Shigella (genus) 7
GCF_002310655.1 Escherichia coli
Escherichia/Shigella (genus) 7
GCF_002310635.1 Escherichia coli
Escherichia/Shigella (genus) 7
GCF_002310615.1 Escherichia coli
Escherichia/Shigella (genus) 7
GCF_002310595.1 Escherichia coli
Escherichia/Shigella (genus) 7
GCF_002310575.1 Escherichia coli
Escherichia/Shigella (genus) 7
GCF_002310555.1 Escherichia coli
Escherichia/Shigella (genus) 7
GCF_002310535.1 Elizabethkingia anophelis
Elizabethkingia (genus) 5
GCF_002310515.1 Elizabethkingia anophelis
Elizabethkingia (genus) 5
GCF_002310495.1 Nibricoccus aquaticus
Nibricoccus (genus) 1
GCF_002310475.1 Lactococcus raffinolactis
Lactococcus (genus) 4
GCF_002310455.2 Caulobacter vibrioides
Caulobacter (genus) 2
GCF_002310435.1 Staphylococcus aureus subsp. aureus str. Newman
Staphylococcus (genus) 5
GCF_002310395.1 Staphylococcus aureus
Staphylococcus (genus) 5
GCF_002310375.3 Caulobacter vibrioides
Caulobacter (genus) 2
GCF_002310335.1 Vibrio anguillarum
Vibrio (genus) 10
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** Some records inherited from rrnDB 3.1.277 only have copy number information for the 23S rRNA but not the 16S rRNA. In these cases, indicated by "n/a", a 16S copy number interpolated from the 23S count is used when searching by 16S copy number, in the above statistics display and when sorting the above table by the 16S column.