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16S copy number statistics
# Genomes Range Mode Median Mean Std dev
48700 1 - 22 7 6.0 5.5 2.8
2025-04-08T16:40:59.619433 image/svg+xml Matplotlib v3.6.3, https://matplotlib.org/
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Data source record id Data source organism name NCBI scientific name (mouse over) RDP taxa 16S copies
GCF_000011485.1 Prochlorococcus marinus str. MIT 9313
Synechococcaceae (family) 2
GCF_000011505.1 Staphylococcus aureus subsp. aureus MRSA252
Staphylococcus (genus) 5
GCF_000011525.1 Staphylococcus aureus subsp. aureus MSSA476
Staphylococcus (genus) 6
GCF_000011545.1 Burkholderia pseudomallei K96243
Burkholderia (genus) 4
GCF_000011565.2 Candidatus Protochlamydia amoebophila UWE25
Parachlamydia (genus) 3
GCF_000011585.1 Methanococcus maripaludis S2
Methanococcus (genus) 3
GCF_000011605.1 Pectobacterium atrosepticum SCRI1043
Pectobacterium (genus) 7
GCF_000011625.1 Bacillus cereus E33L
Bacillus (genus) 13
GCF_000011645.1 Bacillus licheniformis DSM 13 = ATCC 14580
Bacillus (genus) 7
GCF_000011665.1 Streptococcus pyogenes MGAS10394
Streptococcus (genus) 6
GCF_000011685.1 Gluconobacter oxydans 621H
Gluconobacter (genus) 4
GCF_000011705.1 Burkholderia mallei ATCC 23344
Burkholderia (genus) 4
GCF_000011725.1 Helicobacter pylori 51
Helicobacter (genus) 2
GCF_000011745.1 Candidatus Blochmanniella pennsylvanica str. BPEN
Pectobacteriaceae (family) 1
GCF_000011765.3 Streptococcus pyogenes MGAS5005
Streptococcus (genus) 6
GCF_000011805.1 Aliivibrio fischeri ES114
Aliivibrio (genus) 12
GCF_000011825.1 Streptococcus thermophilus LMG 18311
Streptococcus (genus) 6
GCF_000011845.1 Streptococcus thermophilus CNRZ1066
Streptococcus (genus) 6
GCF_000011865.1 Campylobacter jejuni RM1221
Campylobacter (genus) 3
GCF_000011885.1 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Salmonella (genus) 7
GCF_000011905.1 Dehalococcoides mccartyi 195
Dehalococcoides (genus) 1
GCF_000011925.1 Staphylococcus epidermidis RP62A
Staphylococcus (genus) 6
GCF_000011945.1 Anaplasma marginale str. St. Maries
Anaplasma (genus) 1
GCF_000011965.2 Ruegeria pomeroyi DSS-3
Ruegeria (genus) 3
GCF_000011985.1 Lactobacillus acidophilus NCFM
Lactobacillus (genus) 4
GCF_000012005.1 Shigella dysenteriae Sd197
Escherichia/Shigella (genus) 7
GCF_000012025.1 Shigella boydii Sb227
Escherichia/Shigella (genus) 7
GCF_000012045.1 Staphylococcus aureus subsp. aureus COL
Staphylococcus (genus) 6
GCF_000012085.2 Borrelia turicatae 91E135
Borrelia (genus) 1
GCF_000012105.1 Xanthomonas campestris pv. campestris str. 8004
Xanthomonas (genus) 2
GCF_000012125.1 Chlamydia trachomatis A/HAR-13
Chlamydia (genus) 2
GCF_000012165.2 Streptococcus pyogenes MGAS6180
Streptococcus (genus) 6
GCF_000012185.1 Haemophilus influenzae 86-028NP
Haemophilus (genus) 6
GCF_000012205.1 Pseudomonas savastanoi pv. phaseolicola 1448A
Pseudomonas (genus) 5
GCF_000012225.1 Aster yellows witches'-broom phytoplasma AYWB
Acholeplasmataceae (family) 2
GCF_000012245.1 Pseudomonas syringae pv. syringae B728a
Pseudomonas (genus) 5
GCF_000012265.1 Pseudomonas protegens Pf-5
Pseudomonas (genus) 5
GCF_000012285.1 Sulfolobus acidocaldarius DSM 639
Sulfolobus (genus) 1
GCF_000012305.1 Psychrobacter arcticus 273-4
Psychrobacter (genus) 4
GCF_000012325.1 Colwellia psychrerythraea 34H
Colwellia (genus) 9
GCF_000012345.1 Candidatus Pelagibacter ubique HTCC1062
Alphaproteobacteria (class) 1
GCF_000012365.1 Burkholderia thailandensis E264
Burkholderia (genus) 4
GCF_000012385.1 Rickettsia bellii RML369-C
Rickettsia (genus) 1
GCF_000012405.1 Thermobifida fusca YX
Thermobifida (genus) 4
GCF_000012445.1 Pseudomonas fluorescens Pf0-1
Pseudomonas (genus) 6
GCF_000012465.1 Prochlorococcus marinus str. NATL2A
Prochlorococcus (genus) 1
GCF_000012485.1 Pelodictyon luteolum DSM 273
Chlorobium (genus) 2
GCF_000012505.1 Synechococcus sp. CC9902
Synechococcus (genus) 2
GCF_000012525.1 Synechococcus elongatus PCC 7942 = FACHB-805
Synechococcus (genus) 2
GCF_000012545.1 Methanosphaera stadtmanae DSM 3091
Methanosphaera (genus) 4
GCF_000012565.1 Ehrlichia canis str. Jake
Ehrlichia (genus) 1
GCF_000012625.1 Synechococcus sp. CC9605
Synechococcus (genus) 2
GCF_000012645.1 Prochlorococcus marinus str. MIT 9312
Prochlorococcus (genus) 1
GCF_000012665.1 Oleidesulfovibrio alaskensis G20
Oleidesulfovibrio (genus) 4
GCF_000012685.1 Myxococcus xanthus DK 1622
Myxococcus (genus) 4
GCF_000012705.1 Streptococcus agalactiae A909
Streptococcus (genus) 7
GCF_000012725.1 Nitrobacter winogradskyi Nb-255
Nitrobacter (genus) 1
GCF_000012745.1 Thiobacillus denitrificans ATCC 25259
Thiobacillus (genus) 2
GCF_000012765.1 Mycoplasma capricolum subsp. capricolum ATCC 27343
Mycoplasma (genus) 2
GCF_000012785.1 Burkholderia pseudomallei 1710b
Burkholderia (genus) 4
GCF_000012805.1 Nitrosococcus oceani ATCC 19707
Nitrosococcus (genus) 2
GCF_000012825.1 Phocaeicola vulgatus ATCC 8482
Phocaeicola (genus) 7
GCF_000012845.1 Parabacteroides distasonis ATCC 8503
Parabacteroides (genus) 7
GCF_000012865.1 Carboxydothermus hydrogenoformans Z-2901
Carboxydothermus (genus) 4
GCF_000012885.1 Syntrophotalea carbinolica DSM 2380
Syntrophotalea (genus) 2
GCF_000012925.1 Geobacter metallireducens GS-15
Geobacter (genus) 2
GCF_000012945.1 Burkholderia lata
Burkholderia (genus) 6
GCF_000012965.1 Sulfurimonas denitrificans DSM 1251
Sulfurimonas (genus) 4
GCF_000012985.1 Hahella chejuensis KCTC 2396
Hahella (genus) 5
GCF_000013005.1 Erythrobacter litoralis HTCC2594
Erythrobacteraceae (family) 1
GCF_000013025.1 Hyphomonas neptunium ATCC 15444
Hyphomonas (genus) 1
GCF_000013045.1 Salinibacter ruber DSM 13855
Salinibacter (genus) 1
GCF_000013085.1 Rhodospirillum rubrum ATCC 11170
Rhodospirillum (genus) 4
GCF_000013125.1 Anaplasma phagocytophilum str. HZ
Anaplasma (genus) 1
GCF_000013145.1 Ehrlichia chaffeensis str. Arkansas
Ehrlichia (genus) 1
GCF_000013165.1 Neorickettsia sennetsu str. Miyayama
Neorickettsia (genus) 1
GCF_000013185.1 Baumannia cicadellinicola str. Hc (Homalodisca coagulata)
Enterobacterales (order) 2
GCF_000013205.1 Synechococcus sp. JA-3-3Ab
Cyanophyceae (class) 2
GCF_000013225.1 Synechococcus sp. JA-2-3B'a(2-13)
Cyanophyceae (class) 2
GCF_000013245.1 Helicobacter pylori HPAG1
Helicobacter (genus) 2
GCF_000013265.1 Escherichia coli UTI89
Escherichia/Shigella (genus) 7
GCF_000013285.1 Clostridium perfringens ATCC 13124
Clostridium sensu stricto (genus) 8
GCF_000013305.1 Escherichia coli 536
Escherichia/Shigella (genus) 7
GCF_000013325.1 Novosphingobium aromaticivorans DSM 12444
Novosphingobium (genus) 3
GCF_000013345.1 Frankia casuarinae
Frankia (genus) 2
GCF_000013365.1 Rhodopseudomonas palustris HaA2
Rhodopseudomonas (genus) 1
GCF_000013385.1 Anaeromyxobacter dehalogenans 2CP-C
Anaeromyxobacter (genus) 2
GCF_000013405.1 Syntrophus aciditrophicus SB
Syntrophus (genus) 1
GCF_000013425.1 Staphylococcus aureus subsp. aureus NCTC 8325
Staphylococcus (genus) 5
GCF_000013445.1 Methanospirillum hungatei JF-1
Methanospirillum (genus) 4
GCF_000013465.1 Staphylococcus aureus subsp. aureus USA300_FPR3757
Staphylococcus (genus) 5
GCF_000013485.1 Streptococcus pyogenes MGAS9429
Streptococcus (genus) 6
GCF_000013565.1 Jannaschia sp. CCS1
Roseobacteraceae (family) 1
GCF_000013585.1 Shigella flexneri 5 str. 8401
Escherichia/Shigella (genus) 7
GCF_000013605.1 Rhodoferax ferrireducens T118
Rhodoferax (genus) 2
GCF_000013645.1 Paraburkholderia xenovorans LB400
Paraburkholderia (genus) 6
GCF_000013665.1 Saccharophagus degradans 2-40
Saccharophagus (genus) 2
GCF_000013705.1 Methylobacillus flagellatus KT
Methylobacillus (genus) 2
GCF_000013725.1 Methanococcoides burtonii DSM 6242
Methanococcoides (genus) 3
GCF_000013745.1 Rhodopseudomonas palustris BisB18
Rhodopseudomonas (genus) 2
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** Some records inherited from rrnDB 3.1.277 only have copy number information for the 23S rRNA but not the 16S rRNA. In these cases, indicated by "n/a", a 16S copy number interpolated from the 23S count is used when searching by 16S copy number, in the above statistics display and when sorting the above table by the 16S column.